# nanome.ai

> AI-optimized mirror of nanome.ai containing 50 pages totalling 18,203 words of clean markdown content, structured data, and semantic HTML. Original source: https://nanome.ai/. Last updated: 2026-06-15T00:39:13.283Z.

Each page is available as HTML (with JSON-LD structured data) and Markdown (text-only, ideal for LLMs and RAG).

## Homepage

- [Where molecules, scientists,   and agents meet](/content/site-root.html): The collaborative workspace for drug discovery (258 words)

## Articles & Blog Posts

- [publications/index.html](/content/publications/index.html) (1 words)
- [stacks/index.html](/content/stacks/index.html) (1 words)
- [edu/index.html](/content/edu/index.html) (1 words)
- [downloads/nanome-tos-pdf.html](/content/downloads/nanome-tos-pdf.html) (1 words)
- [blog/index.html](/content/blog/index.html) (1 words)
- [v1stacks/index.html](/content/v1stacks/index.html) (1 words)
- [downloads/nanome-license-agreement-pdf.html](/content/downloads/nanome-license-agreement-pdf.html) (1 words)
- [case-studies/index.html](/content/case-studies/index.html) (1 words)
- [An innovation ecosystem, live on the Ethereum mainnet](/content/matryx/index.html): Matryx is a decentralized innovation ecosystem live on the Ethereum mainnet. Post bounties, collaborate on research, and earn credit for contributions. (209 words)
- [Setup](/content/setup/index.html): Download Nanome for Meta Quest, HTC Vive Focus 3, Pico Neo, Apple Vision Pro, or Windows. Setup instructions and direct download links for all supported XR devices. (679 words)
- [MARA](/content/mara/index.html): MARA is an AI co-pilot for scientific informatics, deployed behind your firewall. Build and share tools across your org, orchestrate workflows, and run advanced data science in plain English. (554 words)
- [Antibody Prophylaxis for Lyme Disease](/content/blog/antibody-prophylaxis-for-lyme-disease/index.html): 20 years and a vaccine for Lyme Disease is still in the works, but structural biology has another trick up its sleeve: Antibody Prophylaxis! We met with Dr. Mike Rudolph, senior scientist at NYSBC, in virtual reality to discuss his team's research on Lyme Disease. (978 words)
- [Assay Data Enabled Analysis Workflows in MARA](/content/blog/assay-data-enabled-analysis-workflows-in-mara/index.html): Discover how MARA supports drug hunters and computational chemists with seamless assay data analysis, IC50 calculations, pIC50 scaling, cluster analysis, and molecular visualization for advanced research and drug discovery (716 words)
- [April 2023 Nanome Plugins & home.nanome.ai Updates](/content/blog/april-2023-nanome-plugins-and-home-nanome-ai-updates.html): Discover the power of Nanome with its new innovative plugins and features designed to enhance drug discovery research. Explore Pymol integration, CryoEM, Antibody Representation, Conformer Generator, and more, alongside a seamless chat function and Quick Drop capabilities. Unlock new insights and drive breakthroughs in small molecule drug discovery, protein engineering, macromolecular design, and beyond with Nanome's cutting-edge tools., Discover & share this Nanome GIF with everyone you know. GIPHY is how you search, share, discover, and create GIFs., Discover & share this Nanome GIF with everyone you know. GIPHY is how you search, share, discover, and create GIFs., Discover & share this Nanome GIF with everyone you know. GIPHY is how you search, share, discover, and create GIFs. (634 words)
- [Exploring GABA in VR - Common therapeutics can reverse pathological sleep conditions](/content/blog/exploring-gaba-in-vr-common-therapeutics-can-reverse-pathological-sleep-conditions.html): Important drugs such as Valium and Xanax function by affecting GABA (Gamma-Aminobutyric Acid), the main inhibitory neurotransmitter in the mammalian central nervous system.

Professor Asher Brandt from University of Saint Joseph met Nanome scientists in virtual reality for a guided journey through the latest research on how the GABA-A receptor impacts pathological sleep in humans.

Their session is now available on Youtube! (553 words)
- [Diabetes treatment is about to change forever](/content/blog/diabetes-treatment-is-about-to-change-forever/index.html): The FDA recently approved Tzield, the first CD3-directed monoclonal antibody, which helps manage Type 1 Diabetes, and can delay the onset of symptoms by nearly three years. Nanome’s new VR plug-ins for biologics research make it easy for scientists to visualize, design, and simulate large molecules & complex biologics in 3D. (674 words)
- [Announcing the Early Access Program for Nanome AI: The Next Generation of Molecular Design](/content/blog/announcing-the-early-access-program-for-nanome-ai-the-next-generation-of-molecular-design.html): Discover the future of molecular exploration with Nanome AI, the next evolutionary leap in scientific informatics. Combining the advanced capabilities of Nanome 2.0 with MARA, our Molecular Analysis and Reasoning Assistant, Nanome AI revolutionizes how scientists interact with data and molecules. Available now in early access, you can explore groundbreaking tools, provide feedback, and shape the future of molecular research. Dive into intuitive AI-driven workflows, enhanced collaboration features, and cutting-edge visualization tailored for the latest in XR technology. Request early access and join us in accelerating scientific discovery. (892 words)
- [GPU-backed scientific agents for the workflows computational chemists actually run.](/content/agents/index.html): Specialized AI for the workflows computational chemists actually run. Docking, co-folding, electrostatics, antibody design, and de novo binders, on one platform. (484 words)
- [Pricing](/content/pricing/index.html): Plans for medicinal chemists, computational chemists, structural biologists, crystallographers, protein engineers, educators, and students. (652 words)
- [Calcflow comes to the Apple Vision Pro](/content/blog/calcflow-comes-to-the-apple-vision-pro/index.html): Introducing Calcflow on Apple Vision Pro by Nanome, a breakthrough in 3D graph visualization for both educational and industrial applications. Now available on the Vision App Store, Calcflow Vision offers an immersive platform for exploring complex two-variable functions with ease. Whether you're a student mastering mathematical concepts or a professional in need of advanced visualization tools, this app facilitates a deeper understanding of spatial data through interactive, hands-on manipulation of 3D graphs. Embrace the future of visualization technology with Calcflow Vision, designed to revolutionize STEM learning and industry practices alike. (873 words)
- [Nanome v2.2.0: Measure, Interact, and Analyze from Atom to Angstroms](/content/blog/nanome-v2-2-0-measure-interact-and-analyze-from-atom-to-angstroms.html): Nanome v2.2.0 delivers powerful new features for scientists analyzing molecular structures in immersive, collaborative settings. Whether you're measuring atomic distances, customizing structural representations, or exploring chemical interactions with teammates, this release deepens your ability to understand complex data intuitively and efficiently.
 (561 words)
- [A new era in drug discovery? The first AI-generated drug is going to clinical trial](/content/blog/a-new-era-in-drug-discovery-the-first-ai-generated-drug-is-going-to-clinical-trial.html): AI is finally delivering on its promise to revolutionize drug discovery and development: a COVID-19 drug entirely designed by generative AI has been approved for human use and will soon begin clinical trials in China!  (567 words)
- [Computer-Aided Drug Discovery & Design through MARA](/content/blog/computer-aided-drug-discovery-and-design-through-mara.html): This blog post introduces an example workflow in the MARA Public Beta, a powerful tool designed to streamline Computer Aided Drug Design (CADD) and Structural Based Drug Design (SBDD) workflows. MARA simplifies the process of analyzing three-dimensional structures of biological macromolecules, which is crucial for drug discovery, understanding disease mechanisms, and developing therapeutic strategies. The post outlines a step-by-step MARA workflow, from loading AlphaFold structures and preparing proteins for docking to drawing and docking molecules, and sending results to the Nanome app for further analysis. MARA's natural language prompts significantly reduce task complexity, making it a valuable asset for CADD/SBDD scientists. (580 words)
- [Nanome Joins the OpenFold Consortium](/content/blog/nanome-joins-the-openfold-consortium/index.html): Nanome has joined the OpenFold Consortium, bringing immersive 3D molecular visualization and AI co-pilot MARA to open-source structure prediction tools like OpenFold3. (630 words)
- [Nanome Classic](/content/classic/index.html): Nanome Classic, the original VR molecular visualization platform. Collaborative, immersive, with private deployment and a plugin system for enterprise teams. (255 words)
- [Nanome Plugin Developer Usage Tier Attachment](/content/downloads/nanome-plugin-developer-usage-tier-attachment-pdf.html) (1,660 words)
- [Accelerating drug discovery to create a healthier future](/content/case-studies/nimbus-therapeutics/index.html): Nimbus Therapeutics uses VR solutions from Nanome and Oculus to help design breakthrough medicines, expecting to save tens of thousands of dollars per year on project costs. (205 words)
- [Academic License Update for Nanome](/content/blog/academic-license-update-for-nanome/index.html): Nanome v2.5 introduces updated academic seat types and volume pricing. Learn about Full Seats, Web Seats, and department-wide licensing options. (644 words)
- [MARA Bioinformatics Workflow](/content/blog/mara-bioinformatics-workflow/index.html): MARA is a powerful bioinformatics tool that streamlines data analysis, offering custom-built functionalities for researchers to query databases, interconvert file formats, and organize data for in-depth analysis. Its intuitive workflows allow users to find similar protein sequences, perform multiple sequence alignments, introduce mutations, and create rotamer libraries using simple commands. MARA reduces the need for multiple applications, making it a valuable tool for both experienced bioinformaticians and newcomers. It transforms complex biological data into actionable insights, accelerating discoveries in fields such as medicinal chemistry. (651 words)
- [Webinars](/content/webinars/index.html): Watch Nanome webinars on molecular visualization, drug discovery, and scientific computing. (162 words)
- [Beating the Pandemic in Virtual Reality](/content/blog/beating-the-pandemic-in-virtual-reality/index.html): You can't catch a cold in virtual reality, but you can figure out how to stop the COVID-19 pandemic! Learn how scientists at the Oak Ridge National Laboratory designed an inhibitor for SARS-CoV-2 using virtual reality and a High Flux Isotope Reactor. (404 words)
- [It Doesn't Matter](/content/hometuner/index.html) (26 words)
- [MARA Cheminformatics Workflow](/content/blog/mara-cheminformatics-workflow/index.html): MARA Public Beta showcases its powerful capabilities in cheminformatics workflows. In this example, a scientist creates a molecular library by modifying R-groups in a ligand obtained from a PDB file, with natural language input. The workflow involves downloading a ligand, displaying its labeled 2D structure, and generating new molecules by substituting specific R-groups (e.g., methyl, cyano, methoxyl) at a designated position. MARA then converts the modified SMILES strings to .SDF files for docking studies. This process simplifies batch modifications of molecular structures using natural language commands. (455 words)
- [Novel COVID-19 inhibitors designed inside Virtual Reality](/content/case-studies/ornl/index.html): Scientists at Oak Ridge National Laboratory use Virtual Reality to create COVID-19 inhibitors, accelerating drug discovery to combat the pandemic. (149 words)
- [Terms & Conditions](/content/terms/index.html): Nanome. The collaborative workspace for drug discovery, across web, XR, and AI. (24 words)
- [Open roles](/content/careers/index.html): Build the collaborative workspace for drug discovery. Web, XR, and AI, with a small team of scientists and engineers. (134 words)
- [Collaborative Drug Discovery & Nanome Partnership Announcement](/content/blog/collaborative-drug-discovery-and-nanome-partnership-announcement.html): Nanome and Collaborative Drug Discovery (CDD) have partnered to enhance drug discovery workflows by integrating molecular visualization, design, and data analysis. This collaboration combines CDD Vault's secure management of biological and chemical data with Nanome's MARA platform, which uses natural language to streamline scientific workflows. Together, they aim to improve data-driven decision-making and foster global collaboration in drug discovery. (250 words)
- [Scientists use Virtual Reality to refine new AI-generated drugs for COVID-19](/content/case-studies/insilico-medicine/index.html): Nanome and Insilico Medicine co-authored research describing 10 potential small molecule inhibitors targeting the SARS-CoV-2 main protease, generated by AI and refined in VR. (148 words)
- [MARA Enterprise](/content/mara-enterprise/index.html): MARA is an AI co-pilot for scientific informatics, deployed behind your firewall. Build and share tools across your org, orchestrate workflows, and run advanced data science in plain English. (76 words)
- [Virtual Reality technology for small molecular drug discovery](/content/case-studies/lifearc/index.html): A project by an industrial placement student led to Virtual Reality becoming a powerful tool for drug discovery at LifeArc. (134 words)
- [Newsletter](/content/newsletter/index.html): Nanome. The collaborative workspace for drug discovery, across web, XR, and AI. (12 words)
- [About Nanome](/content/press/index.html): Learn more about the immersive real-time collaboration platform for drug discovery, computational chemistry, COVID-19 research, remote learning, and more. (331 words)
- [VR enables structural biologists to perform intuitive drug design](/content/case-studies/ucsd/index.html): UCSD research group pairs VR with structural biology to pave the way for new treatments for nerve agent poisoning. (141 words)
- [Collaborating for coronavirus drug discovery](/content/case-studies/novartis/index.html): A global drug-discovery team at Novartis is working to address current and future pandemics with help from Nanome and Oculus. (179 words)
- [calcflow/index.html](/content/calcflow/index.html) (1 words)
- [Your tools. Your data. One interface.](/content/integrations/index.html): Nanome plugs into the scientific software and databases your team already runs. 300+ tools, partner integrations, and open APIs. (1,029 words)
- [Nanome Enterprise Usage Tier Attachment](/content/downloads/nanome-enterprise-usage-tier-attachment-pdf.html) (117 words)
- [Nanome Hosted Plugins Usage Tier Attachment](/content/downloads/nanome-hosted-plugins-usage-tier-attachment-pdf.html) (68 words)
- [sitemap-xml.html](/content/sitemap-xml.html) (446 words)

## Resources

- [Full Page Index](/index.html): Browse all cached pages with rich metadata
- [About This Cache](/content/about.html): Methodology, technical details, and usage guidelines
- [XML Sitemap](/sitemap.xml): Machine-readable sitemap for crawler discovery
- [Robots.txt](/robots.txt): Crawler directives